| 1977 | Bach Organ Works Vol. 2 | Wolfgang Rübsam | | 1 |
| 1988 | Toccata & Fugue | Bach; Wolfgang Rübsam | | 1 |
| 1991 | Organ Favourites | J. S. Bach; Wolfgang Ruebsam | | 1 |
| 1992 | Preludes & Fugues BWV 536, 541, 542, 544 and 546 | Johann Sebastian Bach; Wolfgang Rübsam | | 1 |
| 1993 | Partitas: No. 3, BWV 827 / No. 4, BWV 828 | J. S. Bach; Wolfgang Rübsam | | 1 |
| 1993 | Partitas: No. 1, BWV 825 / No. 2, BWV 826 / Capriccio on the Departure of His Most Beloved Brother / Prelude and Fughetta in G major | J. S. Bach; Wolfgang Rübsam | | 1 |
| 1993 | The Art of Fugue, Volume 2 | Johann Sebastian Bach; Wolfgang Rübsam | | 1 |
| 1993 | The Art of Fugue, Volume 1 | J.S. Bach; Wolfgang Rübsam | | 1 |
| 1993 | Trio Sonatas, BWV 525, 526 and 527 / Prelude and Fugue, BWV 543 | Johann Sebastian Bach; Wolfgang Rübsam | | 2 |
| 1993 | Trio Sonatas, BWV 528, 529 and 530 / Prelude and Fugue, BWV 547 | J. S. Bach; Wolfgang Rübsam | | 1 |
| 1993 | Toccatas, BWV 910 - 916 | J.S. Bach; Wolfgang Rübsam | | 2 |
| 1994 | French Suites nos. 3-6, BWV 814-817 | J. S. Bach; Wolfgang Rübsam | | 1 |
| 1994 | Clavierübung III, Volume 2 | J. S. Bach; Wolfgang Rübsam | | 2 |
| 1994 | Clavierübung III, Volume I | J. S. Bach; Wolfgang Rübsam | | 2 |
| 1994 | Das Orgelbüchlein (The Little Organ Book), Volume I | Johann Sebastian Bach; Wolfgang Rübsam | | 1 |
| 1994 | Das Orgelbüchlein (The Little Organ Book), Volume II | Johann Sebastian Bach; Wolfgang Rübsam | | 1 |
| 1994 | Organ Chorales from the Leipzig Manuscript, Vol 1: BWV 651-658 / Toccata, Adagio and Fugue, BWV 564 | J.S. Bach; Wolfgang Rübsam | | 1 |
| 1994 | Organ Works | Johann Sebastian Bach; Wolfgang Rübsam | | 1 |
| 1994 | Organ Chorales From the Leipzig Manuscript, Vol. 2 | J. S. Bach; Wolfgang Rübsam | | 1 |
| 1994 | Organ Transcriptions | J. S. Bach; Wolfgang Rübsam | | 1 |
| 1995 | Inventions and Sinfonias (Complete) | Johann Sebastian Bach; Wolfgang Rübsam | | 1 |
| 1995 | English Suites Nos. 1 - 3 BWV 806 - 808 | J. S. Bach; Wolfgang Rübsam | | 1 |
| 1995 | Christmas Memories | CSSR State Philharmonic (Košice), Alfred Walter, Wolfgang Ruebsam, German Boys’ Choir | | 1 |
| 1996 | Organ Chorales / Preludes and Fugues / Fantasia | Johann Sebastian Bach; Wolfgang Rübsam | | 1 |
| 1999 | Works for Organ, Volume 1: Sonatas nos. 1-4 | Josef Gabriel Rheinberger; Wolfgang Rübsam | | 1 |
| 2000 | Organ Works | Johann Pachelbel: Wolfgang Rübsam | | 1 |
| 2000 | Works for Organ, Volume 2: Sonatas nos. 5-7 | Josef Gabriel Rheinberger; Wolfgang Rübsam | | 1 |
| 2000 | The Great Organ Works | Johann Sebastian Bach; Wolfgang Rübsam | | 1 |
| 2001 | Works for Organ, Volume 3: Sonatas nos. 8 & 9 / Ten Trios, op. 49, nos. 1-10 | Josef Gabriel Rheinberger; Wolfgang Rübsam | | 1 |
| 2001 | Works for Organ, Volume 4: Sonatas nos. 10 & 11 / Five Trios, op. 189, nos. 1-5 | Josef Gabriel Rheinberger; Wolfgang Rübsam | | 1 |
| 2003 | Organ Music, Vol. 3 | Dietrich Buxtehude; Wolfgang Rübsam | | 1 |
| 2003 | Organ Works, Volume 5: Sonatas nos. 12 & 13 / Seven Trios, op. 189, nos. 6-12 | Josef Gabriel Rheinberger; Wolfgang Rübsam | | 1 |
| 2008 | Organ Works, Volume 6: Sonatas nos. 14-16 | Josef Gabriel Rheinberger; Wolfgang Rübsam | | 1 |
| 2008 | Organ Works, Volume 7: Sonatas nos. 17 & 18 / Monologues, op. 162, nos. 1-6 | Josef Gabriel Rheinberger; Wolfgang Rübsam | | 1 |
| 2009 | Organ Works, Volume 8: Sonatas nos. 19 & 20 / Prelude and Fugue in C minor, JWV 16 | Josef Gabriel Rheinberger; Wolfgang Rübsam | | 1 |
| 2014 | Organ Works, Volume 15: Chorale Preludes, op. 67 nos. 16-35 / Monologues, op. 63 nos. 1-4 / Postludium in D minor | Reger; Wolfgang Rübsam | | 1 |
| 2018 | Goldberg Variations | Johann Sebastian Bach; Wolfgang Rübsam | | 2 |
| 2020 | Organ Symphonies, Vol 1 / Symphonies nos. 1 and 2, op. 13 | Charles‐Marie Widor; Wolfgang Rübsam | | 1 |
| 2020 | Organ Symphonies 2: Symphonies nos. 3 and 4, op. 13 | Widor; Wolfgang Rübsam | | 2 |
| 2020 | French Suites, BWV 812-817 | J.S. Bach; Wolfgang Rübsam | | 2 |
| 2021 | Toccatas BWV 910–916 | J.S. Bach; Wolfgang Rübsam | | 2 |
| 2022 | Partitas, BWV 825–830 | Johann Sebastian Bach; Wolfgang Rübsam | | 2 |
| — | Das Orgelwerk | Johann Sebastian Bach; Wolfgang Rübsam | | 1 |
| — | French Suites Nos. 1 & 2, Italian Concerto, Chromatic Fantasia and Fugue | Johann Sebastian Bach; Wolfgang Rübsam | | 1 |
| — | The romantic Organ / Romantische Orgelmusik | Wolfgang Rübsam | | 1 |
