| 1974 | Les Sonates Pour Piano, Volume 7 | W.A. Mozart; Maria João Pires | | 1 |
| 1976 | Les Sonates Pour Piano, Volume 6 | W. A. Mozart; Maria João Pires | | 1 |
| 1976 | Les Sonates pour piano, Volume 4 | W. A. Mozart; Maria João Pires | | 1 |
| 1976 | Les Sonates pour piano, Volume 5 | W. A. Mozart; Maria João Pires | | 1 |
| 1976 | Les Sonates Pour Piano, Volume 2 | Wolfgang Amadeus Mozart; Maria João Pires | | 1 |
| 1979 | Les Sonates Pour Piano, Volume 8 | W.A. Mozart; Maria João Pires | | 1 |
| 1979 | Les Sonates pour piano, Volume 3 | Wolfgang Amadeus Mozart; Maria João Pires | | 1 |
| 1983 | Concertos pour piano nos 23 & 9 “Jeunehomme” / Rondo KV 386 | Mozart; Th. Guschlbauer, Maria João Pires | | 1 |
| 1985 | Kinderszenen / Waldszenen | Schumann; Maria João Pires | | 2 |
| 1985 | Kinderszenen, op.15 / Waldszenen, op.82 / Bunte Blätter, op.99(1,2,4) | Schumann; Maria João Pires | | 1 |
| 1985 | The Complete Sonatas for Piano, Volume 3 | Mozart; Maria João Pires | | 1 |
| 1987 | Piano Sonata Selection | Mozart; Maria João Pires | | 1 |
| 1988 | Sonate Op. 78 / Impromptus Op. 90 Nos. 1-2 | Schubert; Maria João Pires | | 2 |
| 1989 | Klaviersonaten: K. 310, K. 333, K. 545 | Mozart; Maria João Pires | | 2 |
| 1989 | Piano Sonatas K310 & K457 / Fantasia K475 / Rondo 'Alla turca' | Mozart; Maria João Pires | | 1 |
| 1989 | Sonata, D 784 / 6 Moments musicaux, D 780 / 2 Scherzi, D 593 | Schubert; Maria João Pires | | 1 |
| 1990 | Piano sonatas, KV 331, KV 457 / Fantasies, KV 397, KV 475 | Mozart; Maria João Pires | | 1 |
| 1990 | The Complete Sonatas for Piano, Volume 5 | Mozart; Maria João Pires | | 1 |
| 1991 | Sonatas for Piano and Violin, K. 301, K. 304, K. 378, K. 379 | Mozart; Maria João Pires, Augustin Dumay | | 1 |
| 1991 | Mélodies & Lieder "Ci'io mi scordi di te?" | Mozart; Barbara Hendricks, Maria João Pires | | 1 |
| 1991 | Piano Sonatas: K. 283 / K. 284 / K. 330 | Wolfgang Amadeus Mozart; Maria João Pires | 5 | 1 |
| 1992 | Piano Sonatas K.279, K.280, K.311, K.576 | Mozart; Maria João Pires | | 1 |
| 1992 | Die Violinsonaten | Brahms; Augustin Dumay, Maria João Pires | | 2 |
| 1993 | Violin Sonatas | Grieg; Augustin Dumay, Maria João Pires | | 2 |
| 1993 | Klavierkonzerte no. 14 & 26 »Krönungskonzert« | Wolfgang Amadeus Mozart; Wiener Philharmoniker, Claudio Abbado, Maria João Pires | | 1 |
| 1993 | Piano Sonatas K. 281, K. 282, K. 533/K. 494 | Mozart; Maria João Pires | | 1 |
| 1994 | Piano Concerto no. 2 / 24 Preludes | Chopin; Maria João Pires, Royal Philharmonic Orchestra, André Previn | | 1 |
| 1994 | Fantasien und Rondos | Mozart; Maria João Pires | | 1 |
| 1995 | »Fantasiestücke« Musik Für Oboe & Klavier = Music For Oboe & Piano | Schumann, Douglas Boyd, Maria João Pires | | 1 |
| 1995 | The Complete Sonatas for Piano, Volume 2 | Mozart; Maria João Pires | | 1 |
| 1995 | Violin Sonatas | Franck, Debussy, Ravel; Augustin Dumay, Maria João Pires | | 1 |
| 1995 | Klavierkonzerte nos. 17 & 21 | Mozart; The Chamber Orchestra of Europe, Claudio Abbado, Maria João Pires | | 1 |
| 1995 | Piano Duets | Schubert; Maria João Pires, Hüseyin Sermet | | 1 |
| 1995 | Partita no. 1 / English Suite no. 3 / French Suite no. 2 | J.S. Bach; Maria João Pires | | 1 |
| 1996 | Klaviertrios Nr. 1 & 2 | Johannes Brahms; Augustin Dumay, Maria João Pires, Jian Wang | | 1 |
| 1996 | Nocturnes | Chopin; Maria João Pires | | 3 |
| 1996 | Concertos pour Piano, BWV1052, 1055, 1056 | Bach; Michel Corboz, Maria João Pires | | 3 |
| 1997 | Piano Trios K. 496 & K. 502 | Mozart; Maria João Pires, Augustin Dumay, Jian Wang | | 1 |
| 1997 | Le Voyage Magnifique: Schubert Impromptus | Schubert; Maria João Pires | | 1 |
| 1998 | Piano Concerto no. 1 / Fantaisie op. 49 | Chopin; Maria João Pires, Emmanuel Krivine, Chamber Orchestra of Europe | | 1 |
| 1999 | 14 valses | Chopin; Maria João Pires | | 1 |
| 2000 | Piano Concerto / Piano Quintet | Schumann; The Chamber Orchestra of Europe, Claudio Abbado, Maria João Pires | | 1 |
| 2001 | Beethoven: Sonatas "Quasi Una Fantasia" | Maria João Pires | | 1 |
| 2003 | Piano Concertos Nos. 13, 14 & 23 | Mozart; Orquestra Gulbenkian, Theodor Guschlbauer, Maria João Pires | | 1 |
| 2003 | Piano Concertos Nos. 20, 27 | Mozart; Orchestre de Chambre de Lausanne, Armin Jordan, Maria João Pires | | 1 |
| 2005 | Piano Concertos No. 21, 26 / Rondo in A major | Mozart; Maria João Pires, Gulbenkian Foundation Orchestra Lisbon, Theodor Guschlbauer | | 1 |
| 2006 | The Piano Sonatas | Mozart; Maria João Pires | | 2 |
| 2008 | Nocturnes: A Selection | Chopin; Maria João Pires | | 1 |
| 2009 | Mozart Bach | Mozart, Bach; Maria João Pires | | 1 |
| 2013 | Piano Concertos nos. 1 & 2 | Chopin; Maria João Pires, Chamber Orchestra of Europe, Emmanuel Krivine, Royal Philharmonic Orchestra, André Previn | | 2 |
| 2013 | Piano Sonatas D 845 & D 960 | Schubert; Maria João Pires | | 1 |
| 2013 | The Wigmore Hall Recital | Franz Schubert, Johannes Brahms, Felix Mendelssohn,Johann Sebastian Bach; Antônio Meneses, Maria João Pires | | 1 |
| 2014 | Piano Concertos 3 & 4 | Beethoven; Maria João Pires, Swedish Radio Symphony Orchestra, Daniel Harding | | 1 |
| 2015 | Maria João Pires: Complete Concerto Recording On Deutsche Grammophon | Maria João Pires | | 1 |
| 2018 | Piano Sonatas K. 310, 331, 457 & 545 | Mozart; Maria João Pires | | 1 |
| — | 2 concertos pour piano | Chopin; Armin Jordan, Maria João Pires | | 1 |
| — | Klavierkonzerte Nr. 20 & 21 | Mozart; Maria‐João Pires, Theodor Guschlbauer, Armin Jordan | | 2 |
| — | Klavierkonzerte Nr. 26 “Krönungskonzert” & Nr. 27 | Mozart; Maria‐João Pires, Theodor Guschlbauer, Armin Jordan | | 2 |
| — | Les Sonates Pour Piano, Volume 1 | Wolfgang Amadeus Mozart; Maria João Pires | | 1 |
| — | Mozart in Vienna | Mozart; Orchestre de chambre Jean‐François Paillard, Maria João Pires, Theodor Guschlbauer | | 1 |
| — | Piano Concertos nos. 9 & 17 | Mozart; Maria João Pires | | 1 |
| — | Piano Sonatas, Volume 4 | W.A. Mozart; Maria João Pires | | 1 |
| — | Sonatas for Violin and Piano nos. 6, 7 & 10 | Beethoven; Augustin Dumay, Maria João Pires | | 1 |
