| 1977 | L'enfance du Christ | Berlioz; Janet Baker, Eric Tappy, Thomas Allen, Jules Bastin, The John Alldis Choir, London Symphony Orchestra, Sir Colin Davis | | 1 |
| 1978 | Béatrice et Bénédict | Berlioz; Baker, Eda‐Pierre, Watts, Tear, Allen, Lloyd, Bastin, John Alldis Choir, London Symphony Orchestra, Colin Davis | | 1 |
| 1982 | Le nozze di Figaro | Mozart; Kiri Te Kanawa, Lucia Popp, Frederica von Stade, Samuel Ramey, Thomas Allen, Kurt Moll, London Philharmonic Orchestra, Georg Solti | | 4 |
| 1983 | Il barbiere di Siviglia | Gioachino Rossini; Thomas Allen, Agnes Baltsa, Francisco Araiza, Robert Lloyd, Academy of St Martin in the Fields, Neville Marriner | | 8 |
| 1983 | War Requiem | Britten; Elisabeth Söderström, Robert Tear, Thomas Allen, CBSO Chorus, Boys of Christ Church Cathedral, Oxford, City of Birmingham Symphony Orchestra, Simon Rattle | | 1 |
| 1986 | Dido and Aeneas | Purcell; Jessye Norman, Thomas Allen, Marie McLaughlin, English Chamber Orchestra, Raymond Leppard | | 1 |
| 1987 | Eugen Onegin | Peter Tschaikowsky; Thomas Allen, Mirella Freni, Anne Sofie von Otter, Neil Shicoff, Paata Burchuladze, Rundfunkchor Leipzig, Staatskapelle Dresden, James Levine | | 3 |
| 1987 | Songs of Travel / On Wenlock Edge | Ralph Vaughan Williams; Sir Thomas Allen, Robert Tear, City of Birmingham Symphony Orchestra, Simon Rattle | | 1 |
| 1987 | Werther | Massenet; José Carreras, Frederica von Stade, Thomas Allen, Isobel Buchanan, Robert Lloyd, Orchestra of the Royal Opera House, Covent Garden, Colin Davis | | 4 |
| 1989 | The Songs of Henri Duparc | Henri Duparc; Sarah Walker, Thomas Allen, Roger Vignoles | | 1 |
| 1990 | Don Giovanni | Mozart; Thomas Allen, Carol Vaness, Maria Ewing, Elizabeth Gale, Keith Lewis, Richard van Allan, John Rawnsley, Dmitri Kavrakos, Glyndebourne Chorus, London Philharmonic Orchestra, Bernard Haitink | | 2 |
| 1990 | Così fan tutte | Mozart; Karita Mattila, Anne Sofie von Otter, Elzbieta Szmytka, Francisco Araiza, Thomas Allen, José van Dam, Academy of St Martin in the Fields, Sir Neville Marriner | | 1 |
| 1991 | Don Giovanni | Mozart; Thomas Allen, Sharon Sweet, Karita Mattila, Francisco Araiza, Simone Alaimo, Marie McLaughlin, Robert Lloyd, Claudio Otelli, Academy of St Martin in the Fields, Sir Neville Marriner | | 3 |
| 1991 | Eugen Onegin - Szenen und Arien / Highlights / Extraits | Peter Tschaikowsky; James Levine, Thomas Allen, Mirella Freni, Anne Sofie von Otter, Neil Shicoff, Paata Burchuladze, Rundfunkchor Leipzig, Staatskapelle Dresden | | 1 |
| 1991 | The Cunning Little Vixen / Taras Bulba | Janáček; Lillian Watson, Robert Tear, Thomas Allen, Diane Montague, Gwynne Howell, Orchestra and Chorus of the Royal Opera House, Covent Garden, Simon Rattle | | 1 |
| 1992 | Elijah | Mendelssohn; Allen, Rolfe Johnson, Kenny, von Otter, Academy & Chorus of St. Martin in the Fields, Sir Neville Marriner | | 1 |
| 1992 | Das klagende Lied | Mahler; Sinopoli, Cheryl Studer, Waltraud Meier, Reiner Goldberg, Thomas Allen, Shin-Yuh Kai Chorus, Philharmonia Orchestra | | 1 |
| 1993 | The Hyperion Schubert Edition, Volume 16: Schiller Settings | Franz Schubert; Thomas Allen, Graham Johnson | | 1 |
| 1993 | Die Zauberflöte Highlights | Mozart, Barbara Hendricks, June Anderson, Ulrike Steinsky, Jerry Hadley, Robert Lloyd, Thomas Allen, Gottfried Hornik, Sir Charles Mackerras, Scottish Chamber Orchestra, Scottish Chamber Chorus | | 1 |
| 1993 | Mascagni: Cavalleria rusticana / Leoncavallo: I Pagliacci | Pietro Mascagni, Ruggero Leoncavallo; Montserrat Caballé, José Carreras, Matteo Manuguerra, Julia Hamari, Astrid Varnay, Renata Scotto, Ugo Benelli, Sir Thomas Allen, Leslie Fyson, Kari Nurmela | | 2 |
| 1993 | Peter Grimes | Benjamin Britten; Anthony Rolfe Johnson, Felicity Lott, Sir Thomas Allen, Chorus & Orchestra of the Royal Opera House, Covent Garden, Bernard Haitink | | 1 |
| 1993 | Songs of Travel / On Wenlock Edge / Orchestral Songs | Vaughan Williams, Elgar, Butterworth; Thomas Allen, Robert Tear, City of Birmingham Symphony Orchestra, Simon Rattle, Vernon Handley | | 1 |
| 1993 | Songs of Northumbria II | Sir Thomas Allen & Sheila Armstrong | | 1 |
| 1994 | Mélodies | Hector Berlioz; Françoise Pollet, Anne Sofie von Otter, John Aler, Thomas Allen, Cord Garben | | 1 |
| 1994 | Winterreise | Franz Schubert; Thomas Allen, Roger Vignoles | | 1 |
| 1994 | Dover Beach / Songs / String Quartet / Serenade | Samuel Barber; Allen, Endellion String Quartet, Roger Vignoles | | 1 |
| 1996 | Lyric Symphony / Six Maeterlinck Songs | Zemlinsky; Elisabeth Söderström, Felicity Palmer, Thomas Allen, BBC Symphony Orchestra, Michael Gielen, BBC Philharmonic Orchestra, Bernhard Klee | | 1 |
| 1998 | Carmina Burana | Carl Orff; André Previn, Thomas Allen, Sheila Armstrong, Gerald English, London Symphony Chorus, London Symphony Orchestra | | 1 |
| 1998 | Gilbert & Sullivan: The Yeomen of the Guard | Arthur Sullivan & W.S. Gilbert; Sylvia McNair, Jean Rigby, Kurt Streit, Thomas Allen, Bryn Terfel, Academy & Chorus of St. Martin in the Fields, Sir Neville Marriner | | 1 |
| 2000 | Eugene Onegin (Highlights) | Tchaikovsky; Thomas Allen,Mirella Freni, Anne Sofie von Otter, Neil Shicoff, Paata Burchuladze, Staatskapelle Dresden, James Levine | | 1 |
| 2000 | Il ritorno d'Ulisse in Patria | Claudio Monteverdi, Hans Werner Henze; Kathleen Kuhlmann, Ann Murray, Thomas Allen, Vinson Cole, James King, Robert Tear, Tölzer Knabenchor, Radio‐Symphonieorchester Wien, Jeffrey Tate | | 1 |
| 2001 | On the Idle Hill of Summer | Vaughan Williams, Butterworth, Quilter, Graham Peel; Sir Thomas Allen, Geoffrey Parsons | | 1 |
| 2004 | Don Pasquale | Gaetano Donizetti; Renato Bruson, Eva Mei, Frank Lopardo, Sir Thomas Allen, Münchner Rundfunkorchester, Chor des Bayerischen Rundfunks, Roberto Abbado | | 1 |
| 2005 | The English Song Series, Volume 13: Folk Song Arrangements, Volume 2 | Britten; Philip Langridge, Thomas Allen, BBC Singers, Northern Sinfonia, Steuart Bedford, Simon Joly | | 1 |
| 2007 | A Dylan Thomas Trilogy | John Corigliano; Sir Thomas Allen, Ty Jackson, John Tessier, Nashville Symphony Orchestra, Nashville Symphony Chorus, Leonard Slatkin | | 1 |
| 2009 | String Quartet / Serenade / Dover Beach / Songs | Samuel Barber; Thomas Allen, Roger Vignoles, Endellion String Quartet | | 1 |
| 2011 | Requiem / Pavane | Gabriel Fauré; Sir Neville Marriner; Sylvia McNair, Sir Thomas Allen, Academy of St Martin in the Fields | 4 | 2 |
| — | L’Enfance du Christ | Berlioz; Janet Baker, Eric Tappy, Thomas Allen, Jules Bastin, John Alldis Choir, London Symphony Orchestra, Sir Colin Davis | | 1 |
