| 1987 | Arias for Senesino | Handel; Drew Minter, Philharmonia Baroque Orchestra, Nicholas McGegan | | 1 |
| 1988 | Mozart: Horn Concertos, Rondeau K.371, Rondo K.514 | Lowell Greer, Philharmonia Baroque Orchestra, Nicholas McGegan & Wolfgang Amadeus Mozart | | 1 |
| 1988 | Vivaldi: Flute Concertos & Recorder Concertos | Antonio Vivaldi, Janet See, Marion Verbruggen, Philharmonia Baroque Orchestra & Nicholas McGegan | | 1 |
| 1988 | Water Musick | Georg Friedrich Händel; Philharmonia Baroque Orchestra, Nicholas McGegan | | 1 |
| 1989 | Concerti Grossi, op. 6 1-6 | Corelli; Philharmonia Baroque Orchestra, Nicholas McGegan | | 2 |
| 1989 | Susanna | Georg Friedrich Händel; Philharmonia Baroque Orchestra, UC Berkeley Chamber Chorus, Nicholas McGegan | | 1 |
| 1990 | Arias for Montagnana | George Frideric Handel; David Thomas, Philharmonia Baroque Orchestra, Nicholas McGegan | | 1 |
| 1990 | La Resurrezione | Georg Friedrich Händel; Philharmonia Baroque Orchestra, Nicholas McGegan | | 1 |
| 1991 | Messiah | Handel; Philharmonia Baroque Orchestra, Nicholas McGegan | | 1 |
| 1992 | Messiah | Handel; Lorraine Hunt, Janet Williams, Patricia Spence, Drew Minter, Jeffrey Thomas, William Parker, U.C. Berkeley Chamber Chorus, Philharmonia Baroque Orchestra, Nicholas McGegan | | 1 |
| 1992 | Clori, Tirsi e Fileno | Handel; Lorraine Hunt, Jill Feldman, Drew Minter, Philharmonia Baroque Orchestra, Nicholas McGegan | | 3 |
| 1992 | Arias for Durastanti | Handel; Lorraine Hunt, Philharmonia Baroque Orchestra, Nicholas McGegan | | 1 |
| 1992 | Theodora | Handel - Lorraine Hunt, Drew Minter, Jennifer Lane, Jeffrey Thomas, David Thomas, Chamber Chorus of the University of California, Berkeley, Philharmonia Baroque Orchestra & Nicholas McGegan | | 1 |
| 1993 | Flute Concertos | Vivaldi; Philharmonia Baroque Orchestra, Nicholas McGegan, Janet See | | 2 |
| 1993 | Judas Maccabaeus | George Frideric Handel; Guy de Mey, Lisa Saffer, Patricia Spence, David Thomas, UC Berkeley Chamber Chorus, Philharmonia Baroque Orchestra | | 1 |
| 1994 | Arias | Handel; Lorraine Hunt, Philharmonia Baroque Orchestra, Nicholas McGegan | | 1 |
| 1996 | Handel - Apollo e Dafne | Philharmonia Baroque Orchestra, Judith Nelson, David Thomas & Nicholas McGegan | | 1 |
| 1997 | Vivaldi for Diverse Instruments | Antonio Vivaldi; Philharmonia Baroque Orchestra, Nicholas McGegan | | 1 |
| 1999 | Alfred | Arne; Nicholas McGegan, Jennifer Smith, Christine Brandes, David Daniels, Jamie MacDougall, Philharmonia Baroque Orchestra, Philharmonia Chorale | | 1 |
| 2000 | The Masque of Alfred | Thomas Arne; Jennifer Smith, Christine Brandes, David Daniels, Jamie MacDougall, Philharmonia Baroque Orchestra, Philharmonia Chorale, Nicholas McGegan | | 1 |
| 2001 | Horn Concertos | Wolfgang Amadeus Mozart; Philharmonia Baroque Orchestra, Nicholas McGegan, Lowell Greer | | 2 |
| 2001 | Opera Arias Volume 1 - Arias For Senesino | Georg Friedrich Händel - Nicholas McGegan, Philharmonia Baroque Orchestra, Drew Minter | | 1 |
| 2002 | Flute Concertos / Recorder Concertos | Vivaldi; Janet See, Marion Verbruggen, Philharmonia Baroque Orchestra, Nicholas McGegan | | 1 |
| 2003 | Clori, Tirsi e Fileno + Apollo e Dafne | George Frideric Handel; Philharmonia Baroque Orchestra & Nicholas McGegan | | 1 |
| 2006 | Dido and Aeneas | Purcell; Lorraine Hunt Lieberson, Lisa Saffer, Paul Elliott, Michael Dean, The Choir of Clare College, Cambridge, Philharmonia Baroque Orchestra, Nicholas McGegan | | 1 |
| 2011 | The Four Seasons / Violin Concertos | Vivaldi; Philharmonia Baroque Orchestra, Nicholas McGegan, Elizabeth Blumenstock | | 1 |
| 2013 | Symphonies nos. 4 & 7 | Beethoven; Philharmonia Baroque Orchestra, Nicholas McGegan | | 1 |
| 2023 | Symphony no. 57 / Symphony no. 67 / Symphony no. 68 | Joseph Haydn; Philharmonia Baroque Orchestra, Nicholas McGegan | | 1 |
| — | Arias for Cuzzoni | Handel; Lisa Saffer, Philharmonia Baroque Orchestra, Nicholas McGegan | | 1 |
| — | Symphony no. 9 / Opferlied | Ludwig van Beethoven; Philharmonia Baroque Orchestra, San Francisco Choral Artists, UC Berkeley Chamber Chorus, Nicholas McGegan | | 1 |
