| 1977 | Improvised Music From Acoustic Piano and Guitar | Casey Sokol And Eugene Chadbourne | | 1 |
| 1978 | School | Eugene Chadbourne & John Zorn | | 1 |
| 1979 | 2000 Statues and the English Channel | Eugene Chadbourne | | 1 |
| 1979 | Environment for Sextet | John Zorn, Andrea Centazzo, Eugene Chadbourne, Tom Cora, Toshinori Kondo & Polly Bradfield | | 1 |
| 1980 | There’ll Be No Tears Tonight | Eugene Chadbourne | | 4 |
| 1982 | A Blotter Hit of LSDC & W | Eugene Chadbourne | | 1 |
| 1983 | Chicken on the Way | Eugene Chadbourne | | 1 |
| 1984 | The President; He Is Insane | Eugene Chadbourne | | 1 |
| 1985 | Country Protest | Eugene Chadbourne | | 2 |
| 1985 | You Are in Bear Country | Eugene Chadbourne | | 1 |
| 1986 | Corpses of Foreign War | Eugene Chadbourne | | 2 |
| 1987 | Kultural Terrorism | Chadbourne / Rosenberg | | 1 |
| 1987 | LSDC&W: The History of the Chadbournes in America | Eugene Chadbourne | | 3 |
| 1987 | Vermin of the Blues | Eugene Chadbourne | | 2 |
| 1988 | Kill Eugene | Eugene Chadbourne | | 1 |
| 1989 | Country Music in the World of Islam, Volume XV | Eugene Chadbourne | | 1 |
| 1991 | Chad-Born Again | Eugene Chadbourne | | 1 |
| 1992 | Blotter LSD C&W 2001 | Eugene Chadbourne | | 1 |
| 1992 | Chadbourne Baptist Church | Eugene Chadbourne | | 1 |
| 1992 | Terror Has Some Strange Kinfolk | Eugene Chadbourne & Evan Johns | | 1 |
| 1993 | Hot Burrito #2 | Eugene Chadbourne, Werner Dafeldecker & Walter Malli | | 1 |
| 1993 | Songs | Eugene Chadbourne | | 1 |
| 1994 | Another Country | Eugene Chadbourne | | 1 |
| 1995 | Electric Rake Cake | Eugene Chadbourne | | 1 |
| 1995 | Environment For Sextet | Polly Bradfield, Andrea Centazzo, Eugene Chadbourne, Tom Cora, Toshinori Kondo, John Zorn | | 2 |
| 1995 | Locked in a Dutch Coffeeshop | Eugene Chadbourne and Jimmy Carl Black | | 1 |
| 1995 | Pachuco Cadaver | Eugene Chadbourne and Jimmy Carl Black | | 1 |
| 1996 | Chadbourne Barber Shop | Eugene Chadbourne | | 1 |
| 1996 | In Memory of Nikki Arane | Eugene Chadbourne and John Zorn | | 1 |
| 1996 | Jesse Helms Busted With Pornography | Eugene Chadbourne | | 1 |
| 1996 | The Acquaduct | Eugene Chadbourne | | 2 |
| 1997 | End to Slavery | Eugene Chadbourne | | 1 |
| 1997 | Patrizio | Eugene Chadbourne & Paul Lovens | | 1 |
| 1997 | Solo Acoustic Guitar Volume 2 | Eugene Chadbourne | | 2 |
| 1997 | The Hellingtunes | Hellington Country, Eugene Chadbourne, Paul Lovens, Leslie Ross, Pat Thomas, Carrie Shull, Alex Ward | | 1 |
| 1998 | 1977-1981 | Eugene Chadbourne and John Zorn | | 1 |
| 1998 | Insect and Western - Insect Attracter | Eugene Chadbourne | | 1 |
| 1998 | Jungle Cookies | Eugene Chadbourne | | 1 |
| 1998 | To Phil | Eugene Chadbourne | | 1 |
| 1998 | The Insect and Western Party | Eugene Chadbourne | | 1 |
| 1999 | Guitar Lesson | Eugene Chadbourne & Henry Kaiser | | 1 |
| 1999 | Worms With Strings | Eugene Chadbourne | | 1 |
| 2000 | The Zu Side of the Chadbourne | Zu & Eugene Chadbourne | | 1 |
| 2000 | Young at Heart / Forgiven | Eugene Chadbourne featuring Paul Lovens | | 1 |
| 2000 | Bedbugs | Dr. Chadbourne | | 1 |
| 2000 | Don’t Punk Out | Frank Lowe & Eugene Chadbourne | | 1 |
| 2000 | I Talked to Death in Stereo | Eugene Chadbourne | | 1 |
| 2000 | Jazz Bunker | Han Bennink / Eugene Chadbourne / Toshinori Kondo | | 1 |
| 2000 | Pain Pen | Eugene Chadbourne | | 1 |
| 2000 | The Ernest Tubb Memorial Band Texas Session to Doug | Eugene Chadbourne | | 1 |
| 2000 | Young and Innocent Days | Eugene Chadbourne | | 1 |
| 2001 | Motorhellington | Zu & Eugene Chadbourne | | 2 |
| 2001 | 21 Years Later (Train Kept a Rollin’) | Eugene Chadbourne & Han Bennink | | 1 |
| 2001 | Ayler Undead | Eugene Chadbourne | | 1 |
| 2002 | L’Oasis | Eugene Chadbourne & René Lussier | | 1 |
| 2002 | German Country und Western: Sonata and Partita #1 for Violin adapted for 5-string banjo | Johann Sebastian Bach; Eugene Chadbourne | | 1 |
| 2002 | Homeland Security | Eugene Chadbourne | | 1 |
| 2002 | Texas Sessions: Chapter Two (To Doug) | Dr. Eugene Chadbourne | | 1 |
| 2003 | An Afternoon in Austin | Eugene Chadbourne & Susan Alcorn | | 1 |
| 2003 | Country Protest Anew | Eugene Chadbourne & Noahjohn | | 1 |
| 2003 | Country Protest Anew | Eugene Chadbourne with Noahjohn | | 1 |
| 2003 | I Support the Troops and I Want My Money Back | Eugene Chadbourne | | 1 |
| 2004 | And the Wind Cried Malachy | Eugene Chadbourne with The Malachy Papers | | 1 |
| 2005 | The Hills Have Jazz | Eugene Chadbourne | | 1 |
| 2007 | New Directions in Appalachian Music | Eugene Chadbourne, Mike Cooper, Johnny Hamil, Paul Lovens, Phil Minton, Cedric Prive | | 1 |
| 2007 | The Warriors | Toshinori Kondo, Eugene Chadbourne, Andreacentazzo | | 1 |
| 2008 | Country Boobs | Eugene Chadbourne | | 1 |
| 2010 | Reason | Eugene Chadbourne | | 1 |
| 2011 | Bigger Country Boobs | Eugene Chadbourne & Tatsuya Dakatani | | 1 |
| 2011 | Odd Time | Eugene Chadbourne & Warren Smith | | 1 |
| 2013 | Merles Just Want to Have Fun | Bryan and the Haggards feat. Eugene Chadbourne | | 1 |
| 2013 | Why Practice When You Can Eat | Doc Chad & Arbe Garbe | | 1 |
| 2014 | Butterfly Garden | 1000 + 1 Featuring Eugene Chadbourne | | 1 |
| 2014 | Great Duo Live, Vol. II | Eugene Chadbourne | | 1 |
| 2017 | The Planet Gig | Eugene Chadbourne vs. The Blue Ribbons | | 1 |
| 2017 | The Lost Eddie Chatterbox Session | Eugene Chadbourne | | 1 |
| 2018 | Pleasures of the Horror | Eugene Chadbourne with Steve Beresford and Alex Ward | | 1 |
| 2018 | 3 Characters | Eugene Chadbourne & Sunwatchers | | 1 |
| 2019 | Wind Crystals: Guitar Duets By Wadada Leo Smith | Eugene Chadbourne, Henry Kaiser | | 1 |
| 2019 | Faux Amis, Volume 8 | Eugene Chadbourne & Lärmschutz | | 1 |
| 2020 | Duo (Improv) 2017 | Anthony Braxton & Eugene Chadbourne | 5 | 1 |
| 2021 | Color Press | Hifiklub & Eugene Chadbourne | | 1 |
| 2021 | Bad Scene | Eugene Chadbourne & Jim McHugh | | 1 |
| 2023 | John Zorn’s Olympiad Vol. 3 – Pops Plays Pops – Eugene Chadbourne Plays the Book of Heads | Eugene Chadbourne | | 1 |
| — | Eugene Stinks | Eugene Chadbourne | | 1 |
| — | Ghost Legends | Eugene Chadbourne, Charles Tyler | | 1 |
| — | New War | Eugene Chadbourne | | 1 |
| — | Strings | Eugene Chadbourne | | 1 |
| — | To Prevail or Not to Prevail | Eugene Chadbourne | | 1 |
